Author Archives: Budd

About Budd

Project manager for bioinformatics at EMBL in Heidelberg

Report HUB22 – Visual perspectives in science

This page includes a short summary of what took place at HUB22 – Visual perspectives in science, together with feedback and reflection on the event from several of the HUB organisers.

Summary of HUB22

This HUB was the second time we’ve tied an unseminar in with the VizBi conference series, using the unseminar as a social event for conference participants, as well as a chance for the local HUB community to meet up with the conference participants.

We were very happy with the turn-out for the event (50 or so), and that it was a good mix of locals and conference participants. It’s always exciting to have some out-of-town speakers at the unseminars, which we had this time through one of the flash talks, and from Jan Aert’s super-quick introduction to ideas associated with data visualisation for science.

We also tried out something new for HUB – a session using improvisational dance, in this case to visualise London Underground station usage data. This was led by local dance teacher and dance therapist Ariane Konrad, who everyone we spoke with greatly enjoyed working with. Hopefully we can find some interesting contexts for some further collaborations with her in the future!

Another highlight was the amazing work done in the dative exercise at the HUB on making a video to visualise London Underground passenger usage data by David Ma and Francis Rowland!

We were also glad to have food and refreshments made available through the support of de.NBI – thanks to them, and all participants of the event!

Feedback from HUB organisers

Laura Howes

If there was one thing I think was clear to me on reflection, a simpler programme has benefits and allows you to concentrate on:

  • delivering what you want well
  • allowing time and effort for issues like diversity
  • reducing stress

In that spirit and as requested… things I liked

  • props on the signage
  • loved trying something new (dance)
  • the numbers and engagement of participants was great

Things to be improved

  • it generally felt a bit rushed (too much on?)
  • all male and pale speakers
  • mismatch between info on web and where we actually went for post HUB-drinks.

That said I agree that Flo did a great job and I’ve heard some very good feedback so I think again it’s a case of making sure that knowing we could do better doesn’t cloud the ability to appreciate what we achieved.



Adam Gristwood

Things I liked:

  • having a choice of activities – the dance routine was awesome.
  • talks – although a bit more visualisation stuff would have been good, eg. more videos.
  • the starting time! Personal preference but was nice not to have to rush out of work early.
  • range of participants – is fantastic to have people who work outside HD at these events.
  • organisation/mcing was great.

Things to do differently:

  • give people opportunity to present what they learnt (dance routine got some time, but would have been great to hear some of the others)
  • calmer programme
  • someone to take responsibility for guiding people to the pub afterwards?
  • check the destination on a bus when responsible for guiding a large group of people across town!
  • female speakers

Aidan Budd

I really enjoyed seeing some ‘old friends’ again at the HUB – including Gustavo (one of the people who kick-started the Cape Town unseminars, he’s now at EMBL-EBI in Hinxton) and Maria, who was in Paris for several years, and is now back nearish to here, and it turns out worked in Florian’s lab before she left. Small world, eh?!

I thought Florian did a great job yesterday – looked like the evening was very well received. Thanks for that, Florian! And to all the others who worked hard to make it a success.

Things I particularly liked:

  •  the venue fitted the purpose and our activities well
  • the ice breaker was super-simple (in some ways) and went very well
  • trying something different (and I think fun) with the dance
  • Florian’s MCing

Things I think we could do differently:

  • a less full program, for exactly the reasons Laura gives above. I know it’s really hard to keep the number of things you do in an event low (whenever I organise a course, it’s always so hard to say ‘we can do without that’) – but I think, in retrospect, we could have made two HUBs out of this – one on optical illusions, one on data viz, and then both would not have felt so rushed etc.
  • no questions after Flash talks – if people want to talk with the flashtalkes, they can grab them afterwards
  • have more diverse speakers

Malvika’s SciFund writing assignment about HUB

The text below is a blog written by HUB/WUBSyB participant Malvika Sharan, as an assignment for an online course she participated in offered by SciFund challenge for scientific outreach.

Un-seminar in Bioinformatics, it’s finally happening!

I am Malvika Sharan, a PhD student at the University of Würzburg. My target audience includes graduate students and researchers in and around Würzburg, Germany, who are working in the fields of bioinformatics and systems biology.

As a PhD student of bioinformatics (working in a research group where most people are experimental biologists), attending bio-computational conferences has always made me feel like home where everyone talks the same technical language as me (maybe a bit more fluently)!


One of the sessions of Heidelberg Unseminars in Bioinformatics at EMBL. Image by Adam Gristwood. Source:

In one such conference in 2013, while I was still trying to figure out my scientific interests as a ‘first-year-PhD-student’, I signed up for a side-event called ‘Birds of a feather (BoF)’ on ‘Unseminars’. At this event, I learnt that an ‘unseminar’ (which was apparently not a printing mistake for ‘seminar’) refers to a participant-driven unconventional seminar. We, as participants, could choose topics and share our scientific interests with like-minded people in a completely laid-back environment.


Aidan Budd addressing an unseminar. Image by Matthew Betts

Without doubt, this was one of the most welcoming events I ever attended. Aidan Budd, who worked as a computational biologist at European Molecular Biology Laboratory (EMBL) in Heidelberg, was the organizer of this event. He enthusiastically shared his approach of using unseminar as a tool for community building and introduced us to Heidelberg Unseminars in Bioinformatics (HUB) that he had co-founded in Heidelberg.

This experience motivated my supervisor, Konrad, and me to organize a similar event to bring bioinformatics enthusiasts together in our university. We kept in touch with Aidan and contributed to a crowd-sourced effort of writing a scientific article on unseminars and unconferences that got published early this year.

Video filmed at HUB7

Meanwhile, during several events in my university, I met quite a few researchers who have been working in diverse fields of computational biology: those who don’t get an opportunity or platform for interacting with other groups that share their interests.


Nike’s famous philosophy: “JUST DO IT”. Source: WikiMedia commons

Now, more than ever, I felt a desperate need to revisit the idea of bringing the bioinformatics community together in my university. As a ‘final-year-PhD-student’, I have developed teaching skills, organized several events in my graduate school, participated in several hours of unseminar-discussions with my colleagues and gained outreach knowledge from the SciFund challenge training. It looks like the right time has come to “JUST DO IT” (so says the Nike-box on my shoe-stand)!

Well, there it is! A not-too-elaborate background story of the unseminar event that is finally happening in our institute (Institute for Molecular Infection Biology, University of Würzburg) on November 18, 2015 at 5:00 pm. We have set up a basic webpage and sent out invitations to everyone in the university. The response so far is encouraging and I am eager to see how this turns out.

If you have any suggestions, experiences, or anecdotes to share, feel free to get in touch with us!


Now that the first Würzburg WUBSyB has been held, I can report that it was attended by more than 30 researchers from different institutes in University of Würzburg. Due to common interest we would be organizing it on second Thursday of each month.

Report HUB20 – Storytelling in Science

This is a short summary of what took place at HUB20 – Storytelling in Science.

HUB 20 was held on Tuesday, the 8th of December 2015. The theme of the meeting was storytelling in science, with the aim that participants work together to think about how they might use creative ways to talk about their work and aspects relating to their work. More than 30 people from institutes across Heidelberg and beyond attended the event. The evening began with a warm up exercise, where people were given pieces of a Christmas card and then asked to find the people with the other parts to complete the puzzle. Then participants sellotaped the cards together and wrote a message of good will to one of the other HUBs around the world that have been inspired by the Heidelberg Unseminars in Bioinformatics.

Next came a talk by Adam Gristwood, an Editor from EMBL who gave an overview of the potential for weaving narrative into how one speaks about science. One take home message was to think about the audience. One example to give some context to this was given by Adam who recalled a speaker from a performing arts school began what seemed initially to be a fairly mundane talk on this topic, before grabbing a guitar and strumming a tune telling people to *LOVE* their audience, whoever they are and singing a personal story about his experiences with different audiences and their very varied responses. The idea is that people generally like stories about people, so starting your story at a human level – such as why you became a scientist in the first place –, can be a good place to begin. Especially in communicating to the public, but also to peers in different fields of expertise, it can be useful to take a step back – think about why your research is important? What is the bigger picture? It is also important to remember storytelling and narrative is just one tool of many that one can use to communicate – so appropriateness is also important to consider.

Some examples of creative ways to do this can be found here:

With this in mind, participants were asked to get into groups of three and assign one interviewer, one interviewee, one reporter.

Interviewer asked questions to interviewee – with aim to extract unique facts about the person. Reporter to write briefly three “unique” facts they observe from the interview on card provided.

The aim was to encourage participants to think about 1) the way they tell stories about themselves; 2) the way they seek stories and information from others; 3) the kind of information that is interesting to take from

Next up was two talks:

Eva-Maria Gottman, head of marketing at the BioMed-X Innovation Centre, explored how Disney Pixar develops stories for their movies, and some of the simple principles behind it that can be translated to science communication. Eva-Maria also looked at story structure, and how considering this structure can help get your message across.

Lucas Czech, a PhD student at the Heidelberg Institute for Theoretical Studies, gave an brilliantly-illustrated presentation to explain his work science-slam style. He told the Story of Small-land and Tinyton”, to shed light on his work analysing microbial communities via shotgun sequencing and evolutionary placements of the resulting reads on a reference tree.

Participants were then asked to come up with analogies for their research, in order to give a visual hook to the listener who can take their understanding of everyday things and use these to have a better idea about scientific work. But some caution was urged! – as science journalist Jacob Aron once said: “Analogies in science writing are like forklift trucks – when used correctly they do a lot of heavy lifting, but if you don’t know what you’re doing you’ll quickly drive them into a wall of laboured metaphors and cause some major damage.”

This was discussed in small groups, the groups then selected their favourite one and from these selections, people voted for their overall favourites. Ideas included:

  • Is being sick during childhood like being vaccinated against asthma?
  • Building open source software is like being in an open playground where parents gave you the tools and you can do whatever you want with those tools.
  • Bioinformatics is like a recycling machine – put in raw material and get a useful output.
  • 3d chromatin architecture is like a spaghetti with meatballs – it is a mess!
  • And the winner… Nanobodies can be used like a chewing gum in a keyhole so the key does not fit anymore.

For anyone interested in the concept of analogy itself, the following book is a good read: Surfaces and Essences, by Douglas Hofstadter and Emmanuel Sander –

The authors write: “…the spotting of analogies pervades every moment of our thought, thus constituting thought’s core. To put it more explicitly, analogies do not happen in our minds just once a week, once a day, once an hour, or once a minute; they spring up inside our minds numerous times every second. We swim non-stop in an ocean of small, medium-sized and large analogies, ranging from mundane trivialities to brilliant insights… This incessant mental sparkling, lying somewhere below the conscious threshold gives rise to our most basic, humdrum low-level acts of categorisation, whose purpose is to allow us to understand the situations we encounter (or at least their most primordial elements) and to let us communicate with others about them.”

The evening concluded with a gluhwein (or two!) at the Christmas market.

(Report written by Adam Gristwood)